Pre-processing two color microarray data supplementary plots

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DescriptionLink
Images of Red and Green background intensitiesBackground images
Signal to noise ratios for each channelS2N
MA-plots with and without background correctionMA-plots
MA-plots with grid specific loess linesMA-plots
M values by grid before normalizationBoxplots
M values by slide before normalizationBoxplots
Spatial plots of M and A ranks before normalizationSpatial plots
MA-plots after print-tip loess normalization within slideMA-plots
M values by grid after print-tip loess normalizationBoxplots
M values by slide after print-tip loess normalizationBoxplots
Spatial plots of M ranks after print-tip loess normalizationSpatial plots
Red and Green channel intensities density plots showing between slide normalizationDensity plots