Introduction |
| The material on this page supplements the chapter entitled Pre-processing for DNA microarray data to be found in the book Fundamentals of Data Mining in Genomics and Proteomics. A greater description of the techniques used can be found there. |
Pre-processing for Affymetrix GeneChips |
| The data used for this analysis was retrieved from the GEO, http://www.ncbi.nlm.nih.gov/geo/ stored as the data series GSE2603. This data was published in Minn et al (2005) Genes that mediate breast cancer metastasis to lung. Nature. 2005 Jul 28;436(7050):518-24. PubMed id: 16049480 |
| Link | Description |
| Code | R code for carrying out the analysis |
| Supplementary Plots | Additional figures generated using the code |
|
Pre-processing for two color microarrays |
| The data used for this analysis was retrieved from the GEO, http://www.ncbi.nlm.nih.gov/geo/ stored as the data series GSE1438. This data was published in Kuperman et al (2005) Dissecting asthma using focused transgenic modeling and functional genomics. J Allergy Clin Immunol. 2005 Aug;116(2):305-11. Pubmed id: 16083784 |
| Link | Description |
| Code | R code for carrying out the analysis |
| Supplementary Plots | Additional figures generated using the code |
|